GET STARTED

• Before you start
• Sign up for BioData Catalyst powered by Seven Bridges
• Account settings
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TUTORIALS

• Getting started
• Troubleshooting tutorial
• Comprehensive user guide
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GUIDES

• Collaborating on the NHLBI BioData Catalyst: A Guide for Consortia
• Estimate and Manage Your Cloud Costs
• Using NHLBI BioData Catalyst for Workshops and Courses
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ACCESS THE PLATFORM

• Sign up for BioData Catalyst powered by Seven Bridges
• Switch from eRA Commons to login.gov
• Access via the visual interface
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MANAGE AN ANALYSIS ENVIRONMENT

• Projects on BioData Catalyst powered by Seven Bridges
• Create a project
• View a project
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COLLABORATE SECURELY

• Collaboration on BioData Catalyst powered by Seven Bridges
• Add a collaborator to a project
• Set permissions

BROWSE DATASETS

• Study Variable Explorer

DATASETS HUB

• TOPMed Data overview
• ABOUT STUDIES
• ABOUT METADATA FOR STUDIES
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PUBLIC GALLERY

• Overview
• Use public datasets
• Use public files
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PUBLIC PROJECTS

• Human Cell Atlas Preview Datasets
• Data Studio Interactive Analyses

BRING YOUR PRIVATE DATA

• Upload your data to the Platform
• Upload from your computer
• Upload via the command line
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SET METADATA ASSOCIATED WITH A PRIVATE FILE

• Metadata for your private data
• Edit metadata using the visual interface
• Edit metadata using the command line uploader
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SEARCH FILES

• File repositories on the Platform
• Search files on the Platform

ADD FILES TO A PROJECT

• Copy files using the visual interface
• Copy files using the API
• Tag your files

ORGANIZE FILES

• Available actions
• Activity center

ARCHIVE FILES

• File archiving overview
• Archive a file
• Restore a file
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BRING YOUR TOOLS

• About the SDK
• About the Common Workflow Language
• CWL v1.0 improvements over sbg:draft-2
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EDIT AN APP

• About the editor
• The tool editor
• The workflow editor

RUN AN ANALYSIS

• About analyses
• Run a task
• Define app settings
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TASK EXECUTION

• About Spot/Preemptible Instances
• Set execution hints at task level
• Use Spot/Preemptible Instances
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REVIEW A TASK

• Review the task page
• View Task stats
• View Task logs
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INTERACTIVE ANALYSIS

• Interactive analysis on the Platform
• Seven Bridges Genome Browser
• CummeRbundQC RNA-Seq Visualization
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DOWNLOAD RESULTS

• Download results

DEVELOPER TOOLS

• Get your authentication token

CONNECT CLOUD STORAGE

• Connect cloud storage overview
• Volumes
• Aliases
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API Hub

• API Overview
• API Quickstart
• Client libraries
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API CLIENTS

• Seven Bridges Command Line Interface Reference

DATA STUDIO

• About Data Studio
• JupyterLab quick reference
• RStudio quick reference
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SBFS (Beta)

• About SBFS
• Install SBFS manually
• Install SBFS automatically
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SBFS Command Reference

• Overview
• Configure
• List
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