Release notes - December 26, 2022
over 1 year ago by Marko Marinkovic
Recently published apps
We have published six tools from the BEDTools 2.30.0 toolkit:
- BEDTools Coverage - returns the depth and breadth of coverage of features from B on the intervals in A.
- BEDTools Genomecov - computes histograms of feature coverage for a given genome.
- BEDTools GetFasta - extracts sequences from a FASTA file for each of the intervals defined in a BED/GFF/VCF file.
- BEDTools Intersect - screens for overlaps between two sets of genomic features.
- BEDTools Merge - combines overlapping or “book-ended” features in an interval file into a single feature.
- BEDTools Sort - sorts a feature file by chromosome and other criteria.
We have also published the Functional Equivalence Evaluation workflow for comparing the functional equivalence of different WGS/WES processing analyses. Functional Equivalence Evaluation workflow is used to establish if the results can be used together (compared, merged) in downstream analyses (common scenario with large, multi-center sequencing studies where different institutions use their own analysis protocols) or considered equally valid for drawing conclusions.